Hub Description

The hub includes a diploid haplotype-phased chromosome-level genome assembly of the spotted lanternfly (Lycorma delicatula) along with the annotation results from Braker3. Within the hub, there are tracks for the various hints and annotation produced by Braker3 alongside GC content and the distribution of repetitive elements. For more info on the assembly or annotation please see the individual description pages link to each track.

Genome Assembly Comparison

Property Haplotype 1 Haplotype 2
Common Name Spotted Lanternfly
Taxonomic Name Lycorma delicatula (130591)
Assembly Accession GCA_047948215.1 GCA_047948205.1
Assembly Type Haploid (Principal Pseudohaplotype of Diploid) Haploid (Alternative Pseudohaplotype of Diploid)
NCBI BioProject ID 1151129 1151133
Total Assembly Nucleotides 2,201,051,051 bp 2,217,731,716 bp
Assembled Scaffolds 13 13
Repeat Masking 52.47% 51.93%
GC Content 30.74% 30.75%
N50 Size 182,426,808 bp 180,825,106 bp
Contact Anthony Snead (as18950@nyu.edu)
Genome Assembly Image

Photo Credit to Rafael Baez

Data File Downloads

File Type Haplotype 1 Haplotype 2
Assembly FASTA Download Download
Repeat GFF Download Download
Annotation GFF3 Download Download
Annotation GTF Download Download

Acknowledgements and Funding

This material is based upon work supported by the National Science Foundation under Grant Number 2312129 to Brenna Levine. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation. Anthony Snead was supported by the NSF Postdoctoral Research Fellowships in Biology Program under Grant No. 2305939. This work was supported in part through the NYU IT High Performance Computing resources, services, and staff expertise. We acknowledge the Zegar Family Foundation for their generous support that enabled the RNA sequencing and the whole genome sequencing for sex-chromosome identification. We thank the NYU Center for Genomics and System Biology Genomics Core for their assistance and resources.

Funding Source 1 Funding Source 2 Funding Source 3