Hub Description
The hub includes a diploid haplotype-phased chromosome-level genome assembly of the spotted lanternfly (Lycorma delicatula) along with the annotation results from Braker3. Within the hub, there are tracks for the various hints and annotation produced by Braker3 alongside GC content and the distribution of repetitive elements. For more info on the assembly or annotation please see the individual description pages link to each track.
Genome Assembly Comparison
| Property | Haplotype 1 | Haplotype 2 |
|---|---|---|
| Common Name | Spotted Lanternfly | |
| Taxonomic Name | Lycorma delicatula (130591) | |
| Assembly Accession | GCA_047948215.1 | GCA_047948205.1 |
| Assembly Type | Haploid (Principal Pseudohaplotype of Diploid) | Haploid (Alternative Pseudohaplotype of Diploid) |
| NCBI BioProject ID | 1151129 | 1151133 |
| Total Assembly Nucleotides | 2,201,051,051 bp | 2,217,731,716 bp |
| Assembled Scaffolds | 13 | 13 |
| Repeat Masking | 52.47% | 51.93% |
| GC Content | 30.74% | 30.75% |
| N50 Size | 182,426,808 bp | 180,825,106 bp |
| Contact | Anthony Snead (as18950@nyu.edu) | |
Photo Credit to Rafael Baez
Data File Downloads
| File Type | Haplotype 1 | Haplotype 2 |
|---|---|---|
| Assembly FASTA | Download | Download |
| Repeat GFF | Download | Download |
| Annotation GFF3 | Download | Download |
| Annotation GTF | Download | Download |
Acknowledgements and Funding
This material is based upon work supported by the National Science Foundation under Grant Number 2312129 to Brenna Levine. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation. Anthony Snead was supported by the NSF Postdoctoral Research Fellowships in Biology Program under Grant No. 2305939. This work was supported in part through the NYU IT High Performance Computing resources, services, and staff expertise. We acknowledge the Zegar Family Foundation for their generous support that enabled the RNA sequencing and the whole genome sequencing for sex-chromosome identification. We thank the NYU Center for Genomics and System Biology Genomics Core for their assistance and resources.
